Publications

• Dynamics and fate of beneficial mutations under lineage contamination by linked deleterious mutations
  S. Pénisson, T. Singh, P. Sniegowski and P. Gerrish (2017), Genetics, Volume 205 n°3, 1305-1318, doi: 10.1534/genetics.116.194597
  Original publication available at http://www.genetics.org/content/205/3/1305
  
• Beyond the Q-process: various ways of conditioning the multitype Galton-Watson process
  S. Pénisson (2016), ALEA, Lat. Am. J. Probab. Math. Stat., Volume 13 n°1, 223-237
  PDF, Original publication available at http://alea.impa.br/articles/v13/13-09.pdf
  
• The BSE epidemic in Great-Britain: a generic example of risk assessment during the growth and decay phases
  C. Jacob and S. Pénisson (2016), Journal de la Société Française de Statistique: Special Issue on Modelling and Inference for Infectious diseases, Volume 157 n°1, 101-128
  PDF, Original publication available at http://journal-sfds.fr/article/view/523
  
• Estimation of the infection parameter of an epidemic modeled by a branching process
  S. Pénisson (2014), Electronic Journal of Statistics, Volume 8 n°2, 2158-2187, doi:10.1214/14-EJS948
  PDF, Original publication available at http://projecteuclid.org/euclid.ejs/1414588190 
  
• Lineage dynamics and mutation-selection balance in non-adapting asexual populations
  S. Pénisson, P. D. Sniegowski, A. Colato and P. J. Gerrish (2013), Journal of Statistical Mechanics: Theory and Experiment, P01013, doi:10.1088/1742-5468/2013/01/P01013
  Original publication available at http://iopscience.iop.org/
  
• Stochastic methodology for the study of an epidemic decay phase, based on a branching model
  S. Pénisson and C. Jacob (2012), International Journal of Stochastic Analysis, Volume 2012, Article ID 598701, doi:10.1155/2012/598701
  PDF, Original publication available at http://dx.doi.org/10.1155/2012/598701
  
• Continuous-time multitype branching processes conditioned on very late extinction
  S. Pénisson (2011), ESAIM: Probability and Statistics, Volume 15, 417-442, doi:10.1051/ps/2010011
  PDF, Original publication available at http://www.esaim-ps.org/article_S129281001000011X
  

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PhD Dissertation

Conditional limit theorems for multitype branching processes and illustration in epidemiological risk analysis
Summary (English, French, German)
PDF on the publication server of the Universität Potsdam / PDF on the publication server TEL

Supervised by Sylvie Roelly (Universität Potsdam) and Christine Jacob (INRA Jouy-en-Josas)
Defense on July 16th, 2010 at the Universität Potsdam

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Other publications

• Trouver une faille dans la progression cancéreuse
  Un jour, une brève, Mathématiques de la planète Terre (2013)
  Available here
  
• Euler approximations of Lévy-noise driven linear SDEs and exit times
  Master thesis (2007), supervised by Peter Imkeller (Humboldt Universität zu Berlin)
• Modélisation dynamique de la hauteur d'une mare dans le cadre de l'étude épidémiologique de la Fièvre de la Vallée du Rift (PDF)
  Internship report (2005) in INRA Jouy-en-Josas, supervised by Christine Jacob